org.gersteinlab.tyna.core.graph Contains basic definitions of graphs, nodes and edges. Contains graph readers and writers.
org.gersteinlab.tyna.core.operators Contains network operators.
org.gersteinlab.tyna.core.util Contains utility classes useful for network analyses.
org.gersteinlab.tyna.cytoscape Contains classes for the Cytoscape plugin.
org.gersteinlab.tyna.webapp.config Contains classes for making system configurations. Contains classes for accessing data within the tYNA web application. Contains classes that deal with security issues, such as login and access permission.
org.gersteinlab.tyna.webapp.util Contains utility classes useful for building the tYNA application.
org.gersteinlab.tyna.webservice Contains classes for exposing tYNA as a webservice.