Package org.gersteinlab.tyna.core.io

Contains graph readers and writers.

See:
          Description

Interface Summary
GraphReader This interface declares that each implemented class is a graph reader that creates a graph from an input stream or a reader.
GraphWriter This interface declares that each implemented class is a graph writer that outputs a graph to an output stream or a writer.
 

Class Summary
CSVIO This class represents the IO unit for a simple comma-delimited format that assumes a directed or undirected, simple or multi graph with no edge attributes.
SIFIO This class represents the IO unit for the SIF format for directed graphs.
TDIO This class represents the IO unit for a simple tab-delimited format that assumes a directed or undirected, simple or multi graph with no edge attributes.
 

Exception Summary
InputFormatException This class represents an exception due to invalid input file format.
OutputFormatException This class represents an exception due to invalid output file format.
 

Package org.gersteinlab.tyna.core.io Description

Contains graph readers and writers.